MolNFT v1 · #116659 · protein
Reaction of phosphorylated chey with imidazole 3 of 3
5DKF · Chemotaxis protein chey: “Reaction of phosphorylated chey with imidazole 3 of 3”. X-ray diffraction, 2 ligands (BEF, MN), 1 pocket (best druggability 0.56). MolNFT v1 #116659 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5DKF
- Type
- protein
- Length
- 256 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Chemotaxis protein chey
- UniProt
- P0AE68
- Ligands
- BEF, MN
- Pockets
- 1 · best druggability 0.56
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Chemotaxis protein chey | protein | 128 | 45% helix, 16% strand | P0AE68 |
Ligands and binding sites
- BEF · Beryllium trifluoride ion · ligand · 2 copies · chains A, B
- MN · Manganese (II) ion · metal · 2 copies · chains A, B
- IMD · Imidazole · additive · 5 copies · chains A, B
- GOL · Glycerol · additive · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 254 | 0.56 | 0.77 | 44 | empty |
Interfaces
1 interface between chains.
- A–B · 608 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0AE68
- Elsewhere: RCSB PDB 5DKF · PDBe 5DKF · UniProt P0AE68
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