MolNFT v1 · #116600 · protein
Crystal structure of LPG0406 in reduced form from legionella pneumophila
5DIP · Alkyl hydroperoxide reductase ahpd: “Crystal structure of LPG0406 in reduced form from legionella pneumophila”. X-ray diffraction, 1 ligand (NA), 2 pockets (best druggability 0.44). MolNFT v1 #116600 on GenesisL1: 3D structure…
- PDB
- 5DIP
- Type
- protein
- Length
- 224 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Alkyl hydroperoxide reductase ahpd
- EC
- 1.11.1.15
- UniProt
- A0A0C9P2U2
- Ligands
- NA
- Pockets
- 2 · best druggability 0.44
Structure
x-ray diffraction · 1 distinct chain · 81% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Alkyl hydroperoxide reductase ahpd (EC 1.11.1.15) | protein | 112 | 81% helix, 0% strand | A0A0C9P2U2 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 194 | 0.44 | 0.73 | 21 | NA |
| 2 | 131 | 0.36 | 0.72 | 20 | NA |
Interfaces
1 interface between chains.
- A–B · 1383 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 5DIP · Crystal structure of lpg0406 in reduced form from Legionella pneumophila · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0C9P2U2
- Elsewhere: RCSB PDB 5DIP · PDBe 5DIP · UniProt A0A0C9P2U2
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