MolNFT v1 · #116545 · protein

Structure of the siderophore periplasmic binding protein from the fuscachelin gene cluster of thermobifida fusca in I222

5DH2: “Structure of the siderophore periplasmic binding protein from the fuscachelin gene cluster of thermobifida…”. X-ray diffraction, 3 pockets (best druggability 0.72). MolNFT v1 #116545 on GenesisL1: 3D structure, binding sites and…

PDB: 5DH2
Type: protein
Length: 548 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Siderophore periplasmic binding protein
UniProt: Q47NS2
Pockets: 3 · best druggability 0.72

Structure

x-ray diffraction · 2 distinct chains · 46% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Siderophore periplasmic binding protein	protein	274	45% helix, 19% strand	Q47NS2
B	Siderophore periplasmic binding protein	protein	274	47% helix, 19% strand	Q47NS2

Pockets

3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	828	0.72	0.77	67	empty
2	313	0.56	0.76	34	empty
3	251	0.54	0.76	31	empty

Interfaces

1 interface between chains.

A–B · 641 Å² buried · 13 hydrogen bonds · protein-protein

Compared structures

5DH2 · Structure of the siderophore periplasmic binding protein from the fuscachelin gene… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q47NS2
Elsewhere: RCSB PDB 5DH2 · PDBe 5DH2 · UniProt Q47NS2

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