MolNFT v1 · #116526 · protein
Central domain of uncharacterized LPG1148 protein from legionella pneumophila
5DGG · Uncharacterized protein: “Central domain of uncharacterized LPG1148 protein from legionella pneumophila”. X-ray diffraction, 1 ligand (CL), 4 pockets (best druggability 0.46). MolNFT v1 #116526 on GenesisL1: 3D structure, binding…
- PDB
- 5DGG
- Type
- protein
- Length
- 352 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein
- UniProt
- Q5ZWD7
- Ligands
- CL
- Pockets
- 4 · best druggability 0.46
Structure
x-ray diffraction · 2 distinct chains · 49% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein | protein | 176 | 51% helix, 18% strand | Q5ZWD7 |
| B | Uncharacterized protein | protein | 176 | 48% helix, 16% strand | Q5ZWD7 |
Ligands and binding sites
- CL · Chloride ion · ion · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 174 | 0.46 | 0.76 | 33 | empty |
| 2 | 57 | 0.33 | 0.78 | 13 | empty |
| 3 | 70 | 0.33 | 0.75 | 18 | CL |
| 4 | 55 | 0.26 | 0.73 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 569 Ų buried · 6 hydrogen bonds · protein-protein
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5ZWD7
- Elsewhere: RCSB PDB 5DGG · PDBe 5DGG · UniProt Q5ZWD7
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