MolNFT v1 · #116510 · protein

Structure of the parental state of GAF3 from SLR1393 of synechocystis sp. PCC6803 (in vitro assembled PROTEIN/CHROMOPHORE)

5DFY · Histidine kinase: “Structure of the parental state of GAF3 from SLR1393 of synechocystis sp. PCC6803 (in vitro assembled…”. X-ray diffraction, 1 ligand (CYC), 1 pocket (best druggability 0.68). MolNFT v1 #116510 on GenesisL1: 3D…

PDB: 5DFY
Type: protein
Length: 158 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Histidine kinase
EC: 2.7.13.3
UniProt: P73184
Ligands: CYC
Pockets: 1 · best druggability 0.68

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Histidine kinase (EC 2.7.13.3)	protein	158	41% helix, 23% strand	P73184

Ligands and binding sites

CYC · Phycocyanobilin · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	181	0.68	0.86	28	CYC

Modifications

Observed in the structure: 1 cofactor (phycocyanobilin attachment).

Compared structures

5DFY · Structure of the parental state of GAF3 from Slr1393 of Synechocystis sp. PCC6803 (in… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P73184
Elsewhere: RCSB PDB 5DFY · PDBe 5DFY · UniProt P73184

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