MolNFT v1 · #116425 · protein

The crystal structure of hucr mutant (hucr-E48Q) from deinococcus radiodurans

5DD8 · Transcriptional regulator, marr family: “The crystal structure of hucr mutant (hucr-E48Q) from deinococcus radiodurans”. X-ray diffraction, 1 ligand (CL), 3 pockets (best druggability 0.80). MolNFT v1 #116425 on GenesisL1: 3D…

PDB: 5DD8
Type: protein
Length: 312 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Transcriptional regulator, marr family
UniProt: Q9RV71
Ligands: CL
Pockets: 3 · best druggability 0.80

Structure

x-ray diffraction · 1 distinct chain · 68% helix, 4% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Transcriptional regulator, marr family	protein	156	68% helix, 4% strand	Q9RV71

Ligands and binding sites

CL · Chloride ion · ion · 4 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	658	0.80	0.85	76	CL
2	68	0.35	0.76	14	empty
3	60	0.34	0.78	17	empty

Interfaces

1 interface between chains.

A–B · 3259 Å² buried · 26 hydrogen bonds · protein-protein

Compared structures

5DD8 · The Crystal structure of HucR mutant (HucR-E48Q) from Deinococcus radiodurans · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9RV71
Elsewhere: RCSB PDB 5DD8 · PDBe 5DD8 · UniProt Q9RV71

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