MolNFT v1 · #116213 · protein
Crystal structure of aspergillus clavatus SPH3 in complex with galnac
5D6T · Spherulin-4: “Crystal structure of aspergillus clavatus SPH3 in complex with galnac”. X-ray diffraction, 3 ligands (NGA, CL, SO4). MolNFT v1 #116213 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5D6T
- Type
- protein
- Length
- 253 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Spherulin-4
- UniProt
- A1CJQ5
- Ligands
- NGA, CL, SO4
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Spherulin-4 | protein | 253 | 39% helix, 18% strand | A1CJQ5 |
Ligands and binding sites
- NGA · 2-acetamido-2-deoxy-beta-D-galactopyranose · sugar · chains A
- CL · Chloride ion · ion · chains A
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5D6T · Crystal Structure of Aspergillus clavatus Sph3 in complex with GalNAc · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A1CJQ5
- Elsewhere: RCSB PDB 5D6T · PDBe 5D6T · UniProt A1CJQ5
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