MolNFT v1 · #116009 · protein
Crystal structure of maize pdrp bound with AMP
5D0N · Pyruvate, phosphate dikinase regulatory protein…: “Crystal structure of maize pdrp bound with AMP”. X-ray diffraction, 2 ligands (AMP, MG), 1 pocket (best druggability 0.41). MolNFT v1 #116009 on GenesisL1: 3D structure, binding…
- PDB
- 5D0N
- Type
- protein
- Length
- 274 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pyruvate, phosphate dikinase regulatory protein, chloroplastic
- EC
- 2.7.11.32, 2.7.4.27
- UniProt
- Q195N6
- Ligands
- AMP, MG
- Pockets
- 1 · best druggability 0.41
Structure
x-ray diffraction · 1 distinct chain · 46% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pyruvate, phosphate dikinase regulatory protein, chloroplastic (EC 2.7.11.32, 2.7.4.27) | protein | 274 | 46% helix, 15% strand | Q195N6 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 141 | 0.41 | 0.74 | 27 | AMP, MG |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q195N6
- Elsewhere: RCSB PDB 5D0N · PDBe 5D0N · UniProt Q195N6
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