MolNFT v1 · #11593 · protein

Crystal structure of manganese superoxide dismutases from bacillus halodenitrificans

1JR9: “Crystal structure of manganese superoxide dismutases from bacillus halodenitrificans”. X-ray diffraction, 2 ligands (MN, ZN), 1 pocket (best druggability 0.44). MolNFT v1 #11593 on GenesisL1: 3D structure, binding sites and pockets…

PDB: 1JR9
Type: protein
Length: 201 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Manganese superoxide dismutase
EC: 1.15.1.1
UniProt: Q7SIC3
Ligands: MN, ZN
Pockets: 1 · best druggability 0.44

Structure

x-ray diffraction · 1 distinct chain · 52% helix, 5% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Manganese superoxide dismutase (EC 1.15.1.1)	protein	201	52% helix, 5% strand	Q7SIC3

Ligands and binding sites

MN · Manganese (II) ion · metal · chains A
ZN · Zinc ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	143	0.44	0.76	18	empty

Compared structures

1JR9 · Crystal Structure of manganese superoxide dismutases from Bacillus halodenitrificans · the same entry in another collection · chain A against A, TM-score 1.00
Q7SIC3 · AlphaFold monomer V2.0 prediction for superoxide dismutase [mn] (Q7SIC3) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q7SIC3
Elsewhere: RCSB PDB 1JR9 · PDBe 1JR9 · UniProt Q7SIC3

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