MolNFT v1 · #115837 · protein
Structure of the manganese regulator slor
5CVI: “Structure of the manganese regulator slor”. X-ray diffraction, 1 ligand (ZN), 3 pockets (best druggability 0.70). MolNFT v1 #115837 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5CVI
- Type
- protein
- Length
- 427 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Slor
- UniProt
- Q9KIJ2
- Ligands
- ZN
- Pockets
- 3 · best druggability 0.70
Structure
x-ray diffraction · 2 distinct chains · 41% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Slor | protein | 212 | 40% helix, 20% strand | Q9KIJ2 |
| B | Slor | protein | 215 | 41% helix, 20% strand | Q9KIJ2 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 344 | 0.70 | 0.83 | 46 | empty |
| 2 | 353 | 0.67 | 0.81 | 42 | empty |
| 3 | 88 | 0.32 | 0.73 | 25 | empty |
Interfaces
1 interface between chains.
- A–B · 788 Ų buried · 13 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 11 modified (engineered).
Compared structures
- 5CVI · Structure of the manganese regulator SloR · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9KIJ2
- Elsewhere: RCSB PDB 5CVI · PDBe 5CVI · UniProt Q9KIJ2
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