MolNFT v1 · #115821 · DNA
Structural implications of homo-pyrimidine base pairs on the parallel- stranded D(GAY) motif
5CV2 · DNA (5'-D(*AP*CP*TP*CP*GP*GP*AP*CP*GP*AP*CP*GP*AP*T)-3'): “Structural implications of homo-pyrimidine base pairs on the parallel- stranded D(GAY) motif”. X-ray diffraction, 1 ligand (SR). MolNFT v1 #115821 on GenesisL1: 3D…
- PDB
- 5CV2
- Type
- DNA
- Length
- 26 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*AP*CP*TP*CP*GP*GP*AP*CP*GP*AP*CP*GP*AP*T)-3')
- Ligands
- SR
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | DNA (5'-D(*AP*CP*TP*CP*GP*GP*AP*CP*GP*AP*CP*GP*AP*T)-3') | dna | 13 | — | — |
Ligands and binding sites
- SR · Strontium ion · metal · 3 copies · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 869 Ų buried · 60 hydrogen bonds · nucleic-nucleic
Compared structures
- 5CV2 · Structural implications of homo-pyrimidine base pairs on the parallel-stranded d(GAY)… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5CV2 · PDBe 5CV2
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