MolNFT v1 · #115809 · protein
Structure of rhodopseudomonas palustris pdul - phosphate bound form
5CUP · Phosphate propanoyltransferase: “Structure of rhodopseudomonas palustris pdul - phosphate bound form”. X-ray diffraction, 2 ligands (ZN, PO4), 3 pockets (best druggability 0.64). MolNFT v1 #115809 on GenesisL1: 3D structure, binding…
- PDB
- 5CUP
- Type
- protein
- Length
- 378 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phosphate propanoyltransferase
- EC
- 2.3.1.222
- UniProt
- Q21A54
- Ligands
- ZN, PO4
- Pockets
- 3 · best druggability 0.64
Structure
x-ray diffraction · 1 distinct chain · 14% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Phosphate propanoyltransferase (EC 2.3.1.222) | protein | 189 | 14% helix, 41% strand | Q21A54 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 339 | 0.64 | 0.80 | 48 | ZN, PO4 |
| 2 | 236 | 0.60 | 0.81 | 41 | PO4 |
| 3 | 168 | 0.44 | 0.74 | 32 | empty |
Interfaces
1 interface between chains.
- A–B · 965 Ų buried · 20 hydrogen bonds · protein-protein
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q21A54
- Elsewhere: RCSB PDB 5CUP · PDBe 5CUP · UniProt Q21A54
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