MolNFT v1 · #115698 · protein
Crystal structure of sdea dub
5CRB: “Crystal structure of sdea dub”. X-ray diffraction, 3 pockets (best druggability 0.71). MolNFT v1 #115698 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5CRB
- Type
- protein
- Length
- 383 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sdea
- UniProt
- Q6RCR0
- Pockets
- 3 · best druggability 0.71
Structure
x-ray diffraction · 2 distinct chains · 43% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sdea | protein | 192 | 43% helix, 19% strand | Q6RCR0 |
| B | Sdea | protein | 191 | 42% helix, 19% strand | Q6RCR0 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 386 | 0.71 | 0.82 | 68 | empty |
| 2 | 133 | 0.47 | 0.78 | 22 | empty |
| 3 | 71 | 0.43 | 0.81 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 973 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 5CRB · Crystal Structure of SdeA DUB · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6RCR0
- Elsewhere: RCSB PDB 5CRB · PDBe 5CRB · UniProt Q6RCR0
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