MolNFT v1 · #115663 · protein
Crystal structure of the legionella pneumophila effector protein ravz
5CQC · Putative ravz protein: “Crystal structure of the legionella pneumophila effector protein ravz”. X-ray diffraction, 1 ligand (BA), 4 pockets (best druggability 0.36). MolNFT v1 #115663 on GenesisL1: 3D structure, binding sites and…
- PDB
- 5CQC
- Type
- protein
- Length
- 352 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative ravz protein
- UniProt
- Q5ZUV9
- Ligands
- BA
- Pockets
- 4 · best druggability 0.36
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative ravz protein | protein | 352 | 44% helix, 19% strand | Q5ZUV9 |
Ligands and binding sites
- BA · Barium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 59 | 0.36 | 0.79 | 14 | empty |
| 2 | 52 | 0.35 | 0.79 | 23 | empty |
| 3 | 76 | 0.31 | 0.74 | 18 | empty |
| 4 | 60 | 0.26 | 0.73 | 17 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5ZUV9
- Elsewhere: RCSB PDB 5CQC · PDBe 5CQC · UniProt Q5ZUV9
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