MolNFT v1 · #11558 · protein
Bacillus stearothermophilus glycerol dehydrogenase complex with glycerol
1JQA: “Bacillus stearothermophilus glycerol dehydrogenase complex with glycerol”. X-ray diffraction, 1 ligand (ZN), 1 pocket (best druggability 0.68). MolNFT v1 #11558 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1JQA
- Type
- protein
- Length
- 361 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glycerol dehydrogenase
- EC
- 1.1.1.6
- UniProt
- P32816
- Ligands
- ZN
- Pockets
- 1 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain · 58% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glycerol dehydrogenase (EC 1.1.1.6) | protein | 361 | 58% helix, 12% strand | P32816 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 447 | 0.68 | 0.80 | 53 | GOL |
Compared structures
- 1JQA · Bacillus stearothermophilus glycerol dehydrogenase complex with glycerol · the same entry in another collection · chain A against A, TM-score 1.00
- P32816 · AlphaFold monomer V2.0 prediction for glycerol dehydrogenase (P32816) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P32816
- Elsewhere: RCSB PDB 1JQA · PDBe 1JQA · UniProt P32816
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