MolNFT v1 · #115454 · protein
E. COLI mazf form II
5CKB · Endoribonuclease mazf: “E. COLI mazf form II”. X-ray diffraction, 3 pockets (best druggability 0.54). MolNFT v1 #115454 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5CKB
- Type
- protein
- Length
- 207 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Endoribonuclease mazf
- EC
- 3.1.27.-
- UniProt
- P0AE70
- Pockets
- 3 · best druggability 0.54
Structure
x-ray diffraction · 2 distinct chains · 27% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Endoribonuclease mazf (EC 3.1.27.-) | protein | 107 | 24% helix, 31% strand | P0AE70 |
| B | Endoribonuclease mazf (EC 3.1.27.-) | protein | 100 | 29% helix, 29% strand | P0AE70 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 112 | 0.54 | 0.83 | 21 | empty |
| 2 | 173 | 0.45 | 0.75 | 30 | empty |
| 3 | 51 | 0.41 | 0.82 | 12 | empty |
Interfaces
1 interface between chains.
- A–B · 774 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0AE70
- Elsewhere: RCSB PDB 5CKB · PDBe 5CKB · UniProt P0AE70
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.