MolNFT v1 · #115426 · protein

Bacillus halodurans arginine repressor, argr

5CJ9: “Bacillus halodurans arginine repressor, argr”. X-ray diffraction, 1 pocket (best druggability 0.42). MolNFT v1 #115426 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5CJ9
Type: protein
Length: 146 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Arginine repressor
UniProt: Q9K973
Pockets: 1 · best druggability 0.42

Structure

x-ray diffraction · 1 distinct chain · 44% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Arginine repressor	protein	146	44% helix, 23% strand	Q9K973

Ligands and binding sites

PGO · S-1,2-propanediol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	164	0.42	0.73	19	empty

Compared structures

5CJ9 · Bacillus halodurans Arginine repressor, ArgR · the same entry in another collection · chain A against A, TM-score 1.00
Q9K973 · AlphaFold monomer V2.0 prediction for arginine repressor (Q9K973) · a predicted model of the same protein · chain A against A, TM-score 0.56

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9K973
Elsewhere: RCSB PDB 5CJ9 · PDBe 5CJ9 · UniProt Q9K973

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