MolNFT v1 · #11525 · protein

L-ala-D/L-glu epimerase

1JPD: “L-ala-D/L-glu epimerase”. X-ray diffraction, 2 pockets (best druggability 0.60). MolNFT v1 #11525 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1JPD
Type: protein
Length: 318 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: L-ala-D/L-glu epimerase
EC: 5.5.-.-
UniProt: P51981
Pockets: 2 · best druggability 0.60

Structure

x-ray diffraction · 1 distinct chain · 39% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
X	L-ala-D/L-glu epimerase (EC 5.5.-.-)	protein	318	39% helix, 22% strand	P51981

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	305	0.60	0.78	34	empty
2	176	0.47	0.76	23	empty

Compared structures

1JPD · L-Ala-D/L-Glu Epimerase · the same entry in another collection · chain X against X, TM-score 1.00
P51981 · AlphaFold monomer V2.0 prediction for L-ala-D/L-glu epimerase (P51981) · a predicted model of the same protein · chain X against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P51981
Elsewhere: RCSB PDB 1JPD · PDBe 1JPD · UniProt P51981

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