MolNFT v1 · #11524 · protein
Mannose-specific agglutinin (lectin) from snowdrop (galanthus nivalis) bulbs in complex with mannose-ALPHA1,6-(mannose-ALPHA1,3)-mannose- ALPHA1,6-(mannose-ALPHA1,3)-mannose
1JPC: “Mannose-specific agglutinin (lectin) from snowdrop (galanthus nivalis) bulbs in complex with…”. X-ray diffraction, 1 ligand (MAN). MolNFT v1 #11524 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1JPC
- Type
- protein
- Length
- 108 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Agglutinin
- UniProt
- P30617
- Ligands
- MAN
Structure
x-ray diffraction · 1 distinct chain · 0% helix, 44% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Agglutinin | protein | 108 | 0% helix, 44% strand | P30617 |
Ligands and binding sites
- MAN · alpha-D-mannopyranose · sugar · 8 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 1JPC · Mannose-specific agglutinin (lectin) from snowdrop (galanthus nivalis) bulbs in complex… · the same entry in another collection · chain A against A, TM-score 1.00
- P30617 · AlphaFold monomer V2.0 prediction for mannose-specific lectin (P30617) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P30617
- Elsewhere: RCSB PDB 1JPC · PDBe 1JPC · UniProt P30617
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