MolNFT v1 · #115165 · protein
Crystal structure of the strigolactone receptor SHHTL5 from striga hermonthica
5CBK: “Crystal structure of the strigolactone receptor SHHTL5 from striga hermonthica”. X-ray diffraction, 2 ligands (MG, CL), 2 pockets (best druggability 0.78). MolNFT v1 #115165 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5CBK
- Type
- protein
- Length
- 271 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- SHHTL5
- Ligands
- MG, CL
- Pockets
- 2 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain · 47% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | SHHTL5 | protein | 271 | 47% helix, 17% strand | — |
Ligands and binding sites
- MG · Magnesium ion · metal · chains A
- CL · Chloride ion · ion · chains A
- PE3 · 3,6,9,12,15,18,21,24,27,30,33,36,39-tridecaoxahentetracontane-1,41-diol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 299 | 0.78 | 0.89 | 28 | PE3, CL |
| 2 | 53 | 0.36 | 0.78 | 15 | empty |
Compared structures
- 5CBK · Crystal structure of the strigolactone receptor ShHTL5 from Striga hermonthica · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5CBK · PDBe 5CBK
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