MolNFT v1 · #115132 · protein
Crystal structure of E. COLI yaaa, a member of the DUF328/UPF0246 family
5CAJ · UPF0246 protein yaaa: “Crystal structure of E. COLI yaaa, a member of the DUF328/UPF0246 family”. X-ray diffraction, 2 ligands (BEN, CL), 4 pockets (best druggability 0.43). MolNFT v1 #115132 on GenesisL1: 3D structure, binding…
- PDB
- 5CAJ
- Type
- protein
- Length
- 522 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- UPF0246 protein yaaa
- UniProt
- P0A8I3
- Ligands
- BEN, CL
- Pockets
- 4 · best druggability 0.43
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | UPF0246 protein yaaa | protein | 261 | 39% helix, 21% strand | P0A8I3 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 81 | 0.43 | 0.80 | 15 | empty |
| 2 | 82 | 0.41 | 0.79 | 16 | empty |
| 3 | 79 | 0.36 | 0.77 | 19 | CL |
| 4 | 50 | 0.30 | 0.77 | 15 | empty |
Modifications
Observed in the structure: 12 modified (engineered).
Compared structures
- P0A8I3 · AlphaFold monomer V2.0 prediction for peroxide stress resistance protein yaaa (P0A8I3) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A8I3
- Elsewhere: RCSB PDB 5CAJ · PDBe 5CAJ · UniProt P0A8I3
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