MolNFT v1 · #115104 · protein
Crystal structure of GEMC1 coiled-coil domain
5C9N · Geminin coiled-coil domain-containing protein 1: “Crystal structure of GEMC1 coiled-coil domain”. X-ray diffraction, 1 pocket (best druggability 0.30). MolNFT v1 #115104 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5C9N
- Type
- protein
- Length
- 125 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Geminin coiled-coil domain-containing protein 1
- UniProt
- A6NCL1
- Pockets
- 1 · best druggability 0.30
Structure
x-ray diffraction · 2 distinct chains · 94% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Geminin coiled-coil domain-containing protein 1 | protein | 64 | 95% helix, 0% strand | A6NCL1 |
| B | Geminin coiled-coil domain-containing protein 1 | protein | 61 | 92% helix, 0% strand | A6NCL1 |
Ligands and binding sites
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 50 | 0.30 | 0.76 | 12 | empty |
Interfaces
1 interface between chains.
- A–B · 1499 Ų buried · 18 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A6NCL1
- Elsewhere: RCSB PDB 5C9N · PDBe 5C9N · UniProt A6NCL1
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.