MolNFT v1 · #115074 · protein
Crystal structure of MOCVNH3 variant (MO0V) in complex with (N- GLCNAC)4
5C8Q: “Crystal structure of MOCVNH3 variant (MO0V) in complex with (N- GLCNAC)4”. X-ray diffraction, 1 ligand (NAG), 1 pocket (best druggability 0.33). MolNFT v1 #115074 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5C8Q
- Type
- protein
- Length
- 151 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- MOCVNH3 variant
- UniProt
- L7JBY8
- Ligands
- NAG
- Pockets
- 1 · best druggability 0.33
Structure
x-ray diffraction · 1 distinct chain · 21% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | MOCVNH3 variant | protein | 151 | 21% helix, 45% strand | L7JBY8 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 4 copies · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 81 | 0.33 | 0.75 | 16 | empty |
Compared structures
- 5C8Q · Crystal structure of MoCVNH3 variant (Mo0v) in complex with (N-GlcNAc)4 · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt L7JBY8
- Elsewhere: RCSB PDB 5C8Q · PDBe 5C8Q · UniProt L7JBY8
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