MolNFT v1 · #115009 · protein
RV3722C aminotransferase from mycobacterium tuberculosis
5C6U: “RV3722C aminotransferase from mycobacterium tuberculosis”. X-ray diffraction, 3 ligands (PLP, PO4, CL), 3 pockets (best druggability 0.58). MolNFT v1 #115009 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5C6U
- Type
- protein
- Length
- 427 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Aminotransferase
- UniProt
- O69689
- Ligands
- PLP, PO4, CL
- Pockets
- 3 · best druggability 0.58
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Aminotransferase | protein | 427 | 45% helix, 14% strand | O69689 |
Ligands and binding sites
- PLP · Pyridoxal-5'-phosphate · ligand · chains A
- PO4 · Phosphate ion · ion · chains A
- CL · Chloride ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 216 | 0.58 | 0.80 | 26 | PLP, PO4 |
| 2 | 81 | 0.57 | 0.87 | 18 | empty |
| 3 | 82 | 0.32 | 0.73 | 23 | empty |
Modifications
Observed in the structure: 10 modified (engineered).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O69689
- Elsewhere: RCSB PDB 5C6U · PDBe 5C6U · UniProt O69689
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