MolNFT v1 · #114999 · protein
Bacteriophage P2 integrase catalytic domain
5C6K: “Bacteriophage P2 integrase catalytic domain”. X-ray diffraction, 1 pocket (best druggability 0.48). MolNFT v1 #114999 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5C6K
- Type
- protein
- Length
- 332 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Integrase
- UniProt
- P36932
- Pockets
- 1 · best druggability 0.48
Structure
x-ray diffraction · 2 distinct chains · 52% helix, 7% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Integrase | protein | 165 | 53% helix, 7% strand | P36932 |
| B | Integrase | protein | 167 | 52% helix, 7% strand | P36932 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 137 | 0.48 | 0.78 | 30 | empty |
Interfaces
1 interface between chains.
- A–B · 2013 Ų buried · 15 hydrogen bonds · protein-protein
Compared structures
- 5C6K · Bacteriophage P2 integrase catalytic domain · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P36932
- Elsewhere: RCSB PDB 5C6K · PDBe 5C6K · UniProt P36932
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