MolNFT v1 · #114820 · protein

K428A muntant nuclease domain of the large terminase subunit GP2 of bacterial virus SF6 with manganese

5C15 · Gene 2 protein: “K428A muntant nuclease domain of the large terminase subunit GP2 of bacterial virus SF6 with manganese”. X-ray diffraction, 1 ligand (MN), 2 pockets (best druggability 0.52). MolNFT v1 #114820 on GenesisL1: 3D…

PDB: 5C15
Type: protein
Length: 224 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Gene 2 protein
UniProt: Q716H3
Ligands: MN
Pockets: 2 · best druggability 0.52

Structure

x-ray diffraction · 1 distinct chain · 44% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Gene 2 protein	protein	224	44% helix, 19% strand	Q716H3

Ligands and binding sites

MN · Manganese (II) ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	167	0.52	0.79	26	MN
2	161	0.42	0.74	20	empty

Compared structures

5C15 · K428A mutant nuclease domain of the large terminase subunit gp2 of bacterial virus Sf6… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q716H3
Elsewhere: RCSB PDB 5C15 · PDBe 5C15 · UniProt Q716H3

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