MolNFT v1 · #114817 · protein
Nuclease domain of the large terminase subunit GP2 of bacterial virus SF6
5C12 · Gene 2 protein: “Nuclease domain of the large terminase subunit GP2 of bacterial virus SF6”. X-ray diffraction, 1 ligand (MG), 2 pockets (best druggability 0.48). MolNFT v1 #114817 on GenesisL1: 3D structure, binding sites and…
- PDB
- 5C12
- Type
- protein
- Length
- 230 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Gene 2 protein
- UniProt
- Q716H3
- Ligands
- MG
- Pockets
- 2 · best druggability 0.48
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Gene 2 protein | protein | 230 | 40% helix, 18% strand | Q716H3 |
Ligands and binding sites
- MG · Magnesium ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 135 | 0.48 | 0.78 | 25 | empty |
| 2 | 196 | 0.48 | 0.75 | 21 | empty |
Compared structures
- 5C12 · Nuclease domain of the large terminase subunit gp2 of bacterial virus Sf6 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q716H3
- Elsewhere: RCSB PDB 5C12 · PDBe 5C12 · UniProt Q716H3
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