MolNFT v1 · #11481 · DNA
N7-guanine adduct of 2,7-diaminomitosene with DNA
1JO1 · 5'-D(*GP*TP*GP*(DAJ)GP*TP*AP*TP*AP*CP*CP*AP*C)-3': “N7-guanine adduct of 2,7-diaminomitosene with DNA”. Solution nmr, 1 ligand (DAJ). MolNFT v1 #11481 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1JO1
- Type
- DNA
- Length
- 24 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*GP*TP*GP*(DAJ)GP*TP*AP*TP*AP*CP*CP*AP*C)-3'
- Ligands
- DAJ
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | 5'-D(*GP*TP*GP*(DAJ)GP*TP*AP*TP*AP*CP*CP*AP*C)-3' | dna | 12 | — | — |
Ligands and binding sites
- DAJ · Decarbamoyl-2,7-diaminomitosene · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 550 Ų buried · 63 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 2 covalent (covalent ligand).
Compared structures
- 1JO1 · N7-Guanine Adduct of 2,7-diaminomitosene with DNA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1JO1 · PDBe 1JO1
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