MolNFT v1 · #114644 · protein

Palmitate-bound PFABP5

5BVT · Epidermal fatty acid-binding protein: “Palmitate-bound PFABP5”. X-ray diffraction, 1 ligand (PAM), 1 pocket (best druggability 0.84). MolNFT v1 #114644 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5BVT
Type: protein
Length: 134 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Epidermal fatty acid-binding protein
Ligands: PAM
Pockets: 1 · best druggability 0.84

Structure

x-ray diffraction · 1 distinct chain · 16% helix, 55% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Epidermal fatty acid-binding protein	protein	134	16% helix, 55% strand	—

Ligands and binding sites

PAM · Palmitoleic acid · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	248	0.84	0.95	33	PAM

Compared structures

5BVT · Palmitate-bound pFABP5 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 5BVT · PDBe 5BVT

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