MolNFT v1 · #114628 · protein

Crystal structure of lipomyces starkeyi levoglucosan kinase bound to ADP, magnesium and levoglucosan in an alternate orientation.

5BVC: “Crystal structure of lipomyces starkeyi levoglucosan kinase bound to ADP, magnesium and levoglucosan in an…”. X-ray diffraction, 3 ligands (ADP, 4PW, MG), 6 pockets (best druggability 0.76). MolNFT v1 #114628 on GenesisL1: 3D…

PDB: 5BVC
Type: protein
Length: 433 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Levoglucosan kinase
EC: 2.7.-.-
UniProt: B3VI55
Ligands: ADP, 4PW, MG
Pockets: 6 · best druggability 0.76

Structure

x-ray diffraction · 1 distinct chain · 40% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Levoglucosan kinase (EC 2.7.-.-)	protein	433	40% helix, 22% strand	B3VI55

Ligands and binding sites

ADP · Adenosine-5'-diphosphate · ligand · chains A
4PW · Levoglucosan · ligand · chains A
MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	623	0.76	0.82	71	ADP, 4PW, MG
2	54	0.72	0.99	23	empty
3	75	0.38	0.77	17	empty
4	61	0.36	0.79	13	empty
5	58	0.32	0.76	14	empty

Compared structures

5BVC · Crystal structure of Lipomyces starkeyi levoglucosan kinase bound to ADP, magnesium and… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B3VI55
Elsewhere: RCSB PDB 5BVC · PDBe 5BVC · UniProt B3VI55

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.