MolNFT v1 · #11460 · protein
Rabbit serum transferrin at 2.6 a resolution.
1JNF · Serotransferrin: “Rabbit serum transferrin at 2.6 a resolution.”. X-ray diffraction, 3 ligands (FE, CO3, CL), 10 pockets (best druggability 0.75). MolNFT v1 #11460 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1JNF
- Type
- protein
- Length
- 674 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Serotransferrin
- UniProt
- P19134
- Ligands
- FE, CO3, CL
- Pockets
- 10 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Serotransferrin | protein | 674 | 35% helix, 19% strand | P19134 |
Ligands and binding sites
- FE · Fe (III) ion · metal · 2 copies · chains A
- CO3 · Carbonate ion · ion · 2 copies · chains A
- CL · Chloride ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
10 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 211 | 0.75 | 0.90 | 40 | CL |
| 2 | 186 | 0.73 | 0.90 | 32 | empty |
| 3 | 449 | 0.64 | 0.77 | 46 | empty |
| 4 | 255 | 0.63 | 0.81 | 36 | empty |
| 5 | 123 | 0.42 | 0.76 | 27 | empty |
Modifications
Observed in the structure: 19 disulfide (disulfide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P19134
- Elsewhere: RCSB PDB 1JNF · PDBe 1JNF · UniProt P19134
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