MolNFT v1 · #114568 · RNA
Crystal structure of auucu repeating RNA that causes spinocerebellar ataxia type 10 (SCA10)
5BTM · RNA (55-mer): “Crystal structure of auucu repeating RNA that causes spinocerebellar ataxia type 10 (SCA10)”. X-ray diffraction, 2 ligands (MG, NA), 4 pockets (best druggability 0.46). MolNFT v1 #114568 on GenesisL1: 3D structure…
- PDB
- 5BTM
- Type
- RNA
- Length
- 86 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (55-mer)
- Ligands
- MG, NA
- Pockets
- 4 · best druggability 0.46
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | RNA (55-mer) | rna | 43 | — | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 250 | 0.46 | 0.73 | 18 | empty |
| 2 | 242 | 0.46 | 0.73 | 19 | empty |
| 3 | 84 | 0.37 | 0.77 | 12 | empty |
| 4 | 52 | 0.23 | 0.72 | 10 | empty |
Interfaces
1 interface between chains.
- A–B · 472 Ų buried · 8 hydrogen bonds · nucleic-nucleic
Compared structures
- 5BTM · Crystal structure of AUUCU repeating RNA that causes spinocerebellar ataxia type 10… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5BTM · PDBe 5BTM
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.