MolNFT v1 · #114347 · protein
Crystal structure of an uncharacterized protein (PARMER_03598) from parabacteroides merdae atcc 43184 at 1.50 a resolution
5BMT: “Crystal structure of an uncharacterized protein (PARMER_03598) from parabacteroides merdae atcc 43184 at 1.50…”. X-ray diffraction, 2 ligands (SO4, CL), 7 pockets (best druggability 0.78). MolNFT v1 #114347 on GenesisL1: 3D…
- PDB
- 5BMT
- Type
- protein
- Length
- 460 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein
- UniProt
- A7AJI6
- Ligands
- SO4, CL
- Pockets
- 7 · best druggability 0.78
Structure
x-ray diffraction · 2 distinct chains · 10% helix, 53% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein | protein | 232 | 10% helix, 52% strand | A7AJI6 |
| B | Uncharacterized protein | protein | 228 | 11% helix, 54% strand | A7AJI6 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 3 copies · chains A, B
- CL · Chloride ion · ion · 3 copies · chains A, B
- CXS · 3-cyclohexyl-1-propylsulfonic acid · additive · 4 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 987 | 0.78 | 0.80 | 67 | CXS |
| 2 | 148 | 0.46 | 0.76 | 21 | empty |
| 3 | 182 | 0.45 | 0.74 | 33 | CXS |
| 4 | 86 | 0.39 | 0.77 | 13 | empty |
| 5 | 67 | 0.33 | 0.76 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 1043 Ų buried · 6 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 12 modified (engineered).
Compared structures
- 5BMT · Crystal structure of an uncharacterized protein (PARMER_03598) from Parabacteroides… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A7AJI6
- Elsewhere: RCSB PDB 5BMT · PDBe 5BMT · UniProt A7AJI6
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.