MolNFT v1 · #114342 · protein

Crystal structure of apo form of phosphoglucomutase from xanthomonas citri

5BMN: “Crystal structure of apo form of phosphoglucomutase from xanthomonas citri”. X-ray diffraction, 1 ligand (MG), 2 pockets (best druggability 0.67). MolNFT v1 #114342 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5BMN
Type: protein
Length: 448 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Phosphoglucomutase
EC: 5.4.2.2
UniProt: Q8PGN7
Ligands: MG
Pockets: 2 · best druggability 0.67

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Phosphoglucomutase (EC 5.4.2.2)	protein	448	41% helix, 22% strand	Q8PGN7

Ligands and binding sites

MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	601	0.67	0.76	60	empty
2	58	0.31	0.76	13	empty

Modifications

Observed in the structure: 1 modified (phosphorylation).

Compared structures

5BMN · Crystal Structure of APO form of Phosphoglucomutase from Xanthomonas citri · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8PGN7
Elsewhere: RCSB PDB 5BMN · PDBe 5BMN · UniProt Q8PGN7

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