MolNFT v1 · #114308 · protein
Crystal structure of the N-terminal rrm domain from mec-8
5BJR · Mec-8 protein: “Crystal structure of the N-terminal rrm domain from mec-8”. X-ray diffraction, 1 ligand (NH4), 1 pocket (best druggability 0.43). MolNFT v1 #114308 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5BJR
- Type
- protein
- Length
- 170 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Mec-8 protein
- UniProt
- G5ECJ4
- Ligands
- NH4
- Pockets
- 1 · best druggability 0.43
Structure
x-ray diffraction · 2 distinct chains · 22% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Mec-8 protein | protein | 86 | 22% helix, 33% strand | G5ECJ4 |
| B | Mec-8 protein | protein | 84 | 23% helix, 31% strand | G5ECJ4 |
Ligands and binding sites
- NH4 · Ammonium ion · ion · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 67 | 0.43 | 0.81 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 764 Ų buried · 18 hydrogen bonds · protein-protein
Compared structures
- 5BJR · Crystal structure of the N-terminal RRM domain from MEC-8 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G5ECJ4
- Elsewhere: RCSB PDB 5BJR · PDBe 5BJR · UniProt G5ECJ4
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