MolNFT v1 · #114287 · protein
Crystal structure of the cyanobacterial heme-protein TLL0287
5B82 · TLL0287 protein: “Crystal structure of the cyanobacterial heme-protein TLL0287”. X-ray diffraction, 2 ligands (HEC, CL), 3 pockets (best druggability 0.71). MolNFT v1 #114287 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5B82
- Type
- protein
- Length
- 161 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- TLL0287 protein
- UniProt
- Q8DM36
- Ligands
- HEC, CL
- Pockets
- 3 · best druggability 0.71
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | TLL0287 protein | protein | 161 | 42% helix, 19% strand | Q8DM36 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 314 | 0.71 | 0.84 | 50 | HEC, CL |
| 2 | 74 | 0.40 | 0.79 | 21 | empty |
| 3 | 71 | 0.36 | 0.77 | 15 | empty |
Modifications
Observed in the structure: 2 cofactor (heme c attachment).
Compared structures
- 5B82 · Crystal structure of the cyanobacterial heme-protein Tll0287 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8DM36
- Elsewhere: RCSB PDB 5B82 · PDBe 5B82 · UniProt Q8DM36
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