MolNFT v1 · #114271 · protein

OXYR2 regulatory domain C206S mutant from vibrio vulnificus

5B7H · Lysr family transcriptional regulator: “OXYR2 regulatory domain C206S mutant from vibrio vulnificus”. X-ray diffraction, 1 ligand (SO4), 2 pockets (best druggability 0.47). MolNFT v1 #114271 on GenesisL1: 3D structure, binding sites…

PDB: 5B7H
Type: protein
Length: 425 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lysr family transcriptional regulator
UniProt: A0A087I947
Ligands: SO4
Pockets: 2 · best druggability 0.47

Structure

x-ray diffraction · 2 distinct chains · 32% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Lysr family transcriptional regulator	protein	212	33% helix, 26% strand	A0A087I947
B	Lysr family transcriptional regulator	protein	213	32% helix, 26% strand	A0A087I947

Ligands and binding sites

SO4 · Sulfate ion · ion · 3 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	253	0.47	0.73	31	empty
2	225	0.45	0.73	30	empty

Interfaces

1 interface between chains.

A–B · 306 Å² buried · 6 hydrogen bonds · protein-protein

Compared structures

5B7H · OxyR2 regulatory domain C206S mutant from Vibrio vulnificus · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A087I947
Elsewhere: RCSB PDB 5B7H · PDBe 5B7H · UniProt A0A087I947

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