MolNFT v1 · #114268 · protein
Structure of perdeuterated cueo
5B7E · Blue copper oxidase cueo: “Structure of perdeuterated cueo”. X-ray diffraction, 3 ligands (C2O, CU, PO4), 4 pockets (best druggability 0.43). MolNFT v1 #114268 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5B7E
- Type
- protein
- Length
- 477 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Blue copper oxidase cueo
- UniProt
- P36649
- Ligands
- C2O, CU, PO4
- Pockets
- 4 · best druggability 0.43
Structure
x-ray diffraction · 1 distinct chain · 12% helix, 42% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Blue copper oxidase cueo | protein | 477 | 12% helix, 42% strand | P36649 |
Ligands and binding sites
- C2O · Cu-O-Cu linkage · ligand · chains A
- CU · Copper (II) ion · metal · 2 copies · chains A
- PO4 · Phosphate ion · ion · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 57 | 0.43 | 0.83 | 21 | empty |
| 2 | 111 | 0.41 | 0.76 | 21 | empty |
| 3 | 51 | 0.37 | 0.80 | 16 | empty |
| 4 | 88 | 0.33 | 0.74 | 22 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P36649
- Elsewhere: RCSB PDB 5B7E · PDBe 5B7E · UniProt P36649
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