MolNFT v1 · #114246 · protein
Crystal structure of monomeric cytochrome C5 from shewanella violacea
5B6Q · Soluble cytochrome ca: “Crystal structure of monomeric cytochrome C5 from shewanella violacea”. X-ray diffraction, 1 ligand (HEC), 1 pocket (best druggability 0.78). MolNFT v1 #114246 on GenesisL1: 3D structure, binding sites and…
- PDB
- 5B6Q
- Type
- protein
- Length
- 152 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Soluble cytochrome ca
- UniProt
- Q9RHJ6
- Ligands
- HEC
- Pockets
- 1 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain · 59% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Soluble cytochrome ca | protein | 76 | 59% helix, 3% strand | Q9RHJ6 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 479 | 0.78 | 0.85 | 61 | HEC, IMD |
Interfaces
1 interface between chains.
- A–B · 446 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 cofactor, 2 disulfide (heme c attachment, disulfide).
Compared structures
- 5B6Q · Crystal structure of monomeric cytochrome c5 from Shewanella violacea · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9RHJ6
- Elsewhere: RCSB PDB 5B6Q · PDBe 5B6Q · UniProt Q9RHJ6
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