MolNFT v1 · #114112 · protein
Crystal structure of HA33 from clostridium botulinum serotype C strain yoichi
5B2H · Ha-33: “Crystal structure of HA33 from clostridium botulinum serotype C strain yoichi”. X-ray diffraction, 3 pockets (best druggability 0.50). MolNFT v1 #114112 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5B2H
- Type
- protein
- Length
- 566 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ha-33
- UniProt
- Q93HT5
- Pockets
- 3 · best druggability 0.50
Structure
x-ray diffraction · 1 distinct chain · 10% helix, 46% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Ha-33 | protein | 283 | 10% helix, 46% strand | Q93HT5 |
Ligands and binding sites
- PGE · Triethylene glycol · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 175 | 0.50 | 0.77 | 31 | empty |
| 2 | 207 | 0.50 | 0.76 | 24 | empty |
| 3 | 160 | 0.48 | 0.77 | 34 | empty |
Interfaces
1 interface between chains.
- A–B · 1264 Ų buried · 17 hydrogen bonds · protein-protein
Compared structures
- 5B2H · Crystal structure of HA33 from Clostridium botulinum serotype C strain Yoichi · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q93HT5
- Elsewhere: RCSB PDB 5B2H · PDBe 5B2H · UniProt Q93HT5
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