MolNFT v1 · #114099 · protein
X-ray structure of clostridium perfringens sortase B
5B23 · Uncharacterized protein sortase B: “X-ray structure of clostridium perfringens sortase B”. X-ray diffraction, 3 pockets (best druggability 0.46). MolNFT v1 #114099 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5B23
- Type
- protein
- Length
- 366 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein sortase B
- UniProt
- Q8XN25
- Pockets
- 3 · best druggability 0.46
Structure
x-ray diffraction · 1 distinct chain · 23% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Uncharacterized protein sortase B | protein | 183 | 23% helix, 32% strand | Q8XN25 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 147 | 0.46 | 0.76 | 21 | empty |
| 2 | 122 | 0.40 | 0.75 | 20 | empty |
| 3 | 79 | 0.37 | 0.77 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 507 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 5B23 · X-ray Structure of Clostridium Perfringens Sortase B · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8XN25
- Elsewhere: RCSB PDB 5B23 · PDBe 5B23 · UniProt Q8XN25
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