MolNFT v1 · #114055 · protein

Structure of shigella effector lrr domain

5B0N · E3 ubiquitin-protein ligase IPAH9.8: “Structure of shigella effector lrr domain”. X-ray diffraction. MolNFT v1 #114055 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5B0N
Type: protein
Length: 435 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: E3 ubiquitin-protein ligase IPAH9.8
EC: 6.3.2.-
UniProt: Q8VSC3

Structure

x-ray diffraction · 2 distinct chains · 18% helix, 13% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	E3 ubiquitin-protein ligase IPAH9.8 (EC 6.3.2.-)	protein	218	18% helix, 12% strand	Q8VSC3
B	E3 ubiquitin-protein ligase IPAH9.8 (EC 6.3.2.-)	protein	217	18% helix, 13% strand	Q8VSC3

Interfaces

1 interface between chains.

A–B · 919 Å² buried · 23 hydrogen bonds · protein-protein

Compared structures

5B0N · Structure of Shigella effector LRR domain · the same entry in another collection · chain A against A, TM-score 1.00
Q8VSC3 · AlphaFold monomer V2.0 prediction for E3 ubiquitin-protein ligase IPAH9.8 (Q8VSC3) · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8VSC3
Elsewhere: RCSB PDB 5B0N · PDBe 5B0N · UniProt Q8VSC3

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