MolNFT v1 · #113971 · protein
A psychrophilic glycoside hydrolase family 10 endo-beta-1,4-xylanase
5AY7: “A psychrophilic glycoside hydrolase family 10 endo-beta-1,4-xylanase”. X-ray diffraction, 2 pockets (best druggability 0.57). MolNFT v1 #113971 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5AY7
- Type
- protein
- Length
- 641 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Xylanase
- EC
- 3.2.1.8
- Pockets
- 2 · best druggability 0.57
Structure
x-ray diffraction · 2 distinct chains · 41% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Xylanase (EC 3.2.1.8) | protein | 315 | 41% helix, 18% strand | — |
| B | Xylanase (EC 3.2.1.8) | protein | 326 | 41% helix, 18% strand | — |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 363 | 0.57 | 0.75 | 46 | empty |
| 2 | 55 | 0.29 | 0.75 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 224 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 5AY7 · A psychrophilic glycoside hydrolase family 10 endo-beta-1,4-xylanase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5AY7 · PDBe 5AY7
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