MolNFT v1 · #113968 · RNA

Crystal structure of RNA duplex containing C-C base pairs

5AY3 · RNA (5'-R(*GP*GP*AP*CP*UP*(CBR)P*GP*A*CP*UP*CP*C)-3'): “Crystal structure of RNA duplex containing C-C base pairs”. X-ray diffraction, 1 pocket (best druggability 0.40). MolNFT v1 #113968 on GenesisL1: 3D structure, binding sites…

PDB: 5AY3
Type: RNA
Length: 24 nucleotides
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA (5'-R(*GP*GP*AP*CP*UP*(CBR)P*GP*A*CP*UP*CP*C)-3')
Pockets: 1 · best druggability 0.40

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	RNA (5'-R(GPGPAPCPUP(CBR)PGPACPUPCPC)-3')	rna	12	—	—

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	180	0.40	0.73	15	empty

Interfaces

1 interface between chains.

A–B · 540 Å² buried · 45 hydrogen bonds · nucleic-nucleic

Modifications

Observed in the structure: 2 modified (nucleotide modification).

Compared structures

5AY3 · Crystal structure of RNA duplex containing C-C base pairs · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 5AY3 · PDBe 5AY3

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