MolNFT v1 · #113929 · protein
Arthrobacter globiformis T6 isomalto-dextranse complexed with panose
5AWQ · Isomaltodextranase: “Arthrobacter globiformis T6 isomalto-dextranse complexed with panose”. X-ray diffraction, 2 ligands (GLC, PO4), 5 pockets (best druggability 0.74). MolNFT v1 #113929 on GenesisL1: 3D structure, binding sites and…
- PDB
- 5AWQ
- Type
- protein
- Length
- 596 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Isomaltodextranase
- UniProt
- Q7WSN5
- Ligands
- GLC, PO4
- Pockets
- 5 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain · 26% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Isomaltodextranase | protein | 596 | 26% helix, 30% strand | Q7WSN5 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 61 | 0.74 | 0.99 | 19 | empty |
| 2 | 244 | 0.57 | 0.78 | 35 | GLC |
| 3 | 84 | 0.54 | 0.85 | 28 | empty |
| 4 | 130 | 0.43 | 0.76 | 29 | empty |
| 5 | 124 | 0.38 | 0.74 | 18 | empty |
Modifications
Observed in the structure: 1 modified (nonstandard).
Compared structures
- 5AWQ · Arthrobacter globiformis T6 isomalto-dextranse complexed with panose · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7WSN5
- Elsewhere: RCSB PDB 5AWQ · PDBe 5AWQ · UniProt Q7WSN5
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