MolNFT v1 · #113928 · protein

Arthrobacter globiformis T6 isomalto-dextranase complexed with isomaltose

5AWP · Isomaltodextranase: “Arthrobacter globiformis T6 isomalto-dextranase complexed with isomaltose”. X-ray diffraction, 3 ligands (BGC, GLC, PO4), 6 pockets (best druggability 0.74). MolNFT v1 #113928 on GenesisL1: 3D structure, binding…

PDB: 5AWP
Type: protein
Length: 595 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Isomaltodextranase
UniProt: Q7WSN5
Ligands: BGC, GLC, PO4
Pockets: 6 · best druggability 0.74

Structure

x-ray diffraction · 1 distinct chain · 25% helix, 30% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Isomaltodextranase	protein	595	25% helix, 30% strand	Q7WSN5

Ligands and binding sites

BGC · beta-D-glucopyranose · sugar · 2 copies · chains A
GLC · alpha-D-glucopyranose · sugar · 2 copies · chains A
PO4 · Phosphate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	61	0.74	0.99	19	empty
2	301	0.59	0.78	38	BGC, GLC
3	87	0.56	0.86	28	empty
4	52	0.44	0.84	18	empty
5	128	0.43	0.76	30	empty

Modifications

Observed in the structure: 1 modified (nonstandard).

Compared structures

5AWP · Arthrobacter globiformis T6 isomalto-dextranase complexed with isomaltose · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q7WSN5
Elsewhere: RCSB PDB 5AWP · PDBe 5AWP · UniProt Q7WSN5

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