MolNFT v1 · #113927 · protein
Arthrobacter globiformis T6 isomalto-dextranse
5AWO · Isomaltodextranase: “Arthrobacter globiformis T6 isomalto-dextranse”. X-ray diffraction, 1 ligand (PO4), 5 pockets (best druggability 0.73). MolNFT v1 #113927 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5AWO
- Type
- protein
- Length
- 596 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Isomaltodextranase
- UniProt
- Q7WSN5
- Ligands
- PO4
- Pockets
- 5 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 25% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Isomaltodextranase | protein | 596 | 25% helix, 31% strand | Q7WSN5 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 62 | 0.73 | 0.98 | 19 | empty |
| 2 | 314 | 0.58 | 0.77 | 38 | ACT |
| 3 | 60 | 0.49 | 0.86 | 20 | empty |
| 4 | 155 | 0.46 | 0.76 | 35 | empty |
| 5 | 160 | 0.41 | 0.73 | 18 | empty |
Modifications
Observed in the structure: 1 modified (nonstandard).
Compared structures
- 5AWO · Arthrobacter globiformis T6 isomalto-dextranse · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7WSN5
- Elsewhere: RCSB PDB 5AWO · PDBe 5AWO · UniProt Q7WSN5
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