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MolNFT v1 · #113764 · protein

Naturally occurring mutations in the MPS1 gene predispose cells to kinase inhibitor drug resistance.

5AP3 · Dual specificity protein kinase ttk: “Naturally occurring mutations in the MPS1 gene predispose cells to kinase inhibitor drug resistance.”. X-ray diffraction, 1 ligand (AU5), 1 pocket (best druggability 0.70). MolNFT v1 #113764 on…

PDB
5AP3
Type
protein
Length
254 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Dual specificity protein kinase ttk
EC
2.7.12.1
UniProt
P33981
Ligands
AU5
Pockets
1 · best druggability 0.70

Structure

x-ray diffraction · 1 distinct chain · 39% helix, 20% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ADual specificity protein kinase ttk (EC 2.7.12.1)protein25439% helix, 20% strandP33981

Ligands and binding sites

  • AU5 · 9-cyclopentyl-2-[[2-methoxy-4-[(1-methylpiperidin-4-yl)oxy]-phenyl]amino]-7-methyl-7,9-dihydro-8H-purin-8-one · ligand · chains A
  • 7PE · 2-(2-(2-(2-(2-(2-ethoxyethoxy)ethoxy)ethoxy)ethoxy) ethoxy)ethanol · additive · 4 copies · chains A
  • EDO · 1,2-ethanediol · additive · 3 copies · chains A
  • DMS · Dimethyl sulfoxide · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
14400.700.81397PE, AU5

Modifications

Observed in the structure: 1 modified (phosphorylation).

Compared structures

  • 5AP3 · Naturally Occurring Mutations in the MPS1 Gene Predispose Cells to Kinase Inhibitor Drug… · the same entry in another collection · chain A against A, TM-score 1.00

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