MolNFT v1 · #113739 · protein

Crystal structure of wild type pneumolysin.

5AOD: “Crystal structure of wild type pneumolysin.”. X-ray diffraction, 3 pockets (best druggability 0.62). MolNFT v1 #113739 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5AOD
Type: protein
Length: 474 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Pneumolysin
UniProt: Q04IN8
Pockets: 3 · best druggability 0.62

Structure

x-ray diffraction · 1 distinct chain · 20% helix, 42% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Pneumolysin	protein	474	20% helix, 42% strand	Q04IN8

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	139	0.62	0.86	32	empty
2	83	0.36	0.76	18	empty
3	68	0.34	0.77	20	empty

Compared structures

5AOD · Crystal structure of wild type pneumolysin. · the same entry in another collection · chain A against A, TM-score 1.00
Q04IN8 · AlphaFold monomer V2.0 prediction for pneumolysin (Q04IN8) · a predicted model of the same protein · chain A against A, TM-score 0.86

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q04IN8
Elsewhere: RCSB PDB 5AOD · PDBe 5AOD · UniProt Q04IN8

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