MolNFT v1 · #113297 · protein
High resolution X-ray structure of the N-terminal truncated form (residues 1-11) of mycobacterium tuberculosis hbn
5AB8 · Group 1 truncated hemoglobin glbn: “High resolution X-ray structure of the N-terminal truncated form (residues 1-11) of mycobacterium…”. X-ray diffraction, 1 ligand (HEM), 1 pocket (best druggability 0.73). MolNFT v1 #113297 on…
- PDB
- 5AB8
- Type
- protein
- Length
- 117 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Group 1 truncated hemoglobin glbn
- UniProt
- P9WN25
- Ligands
- HEM
- Pockets
- 1 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 68% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Group 1 truncated hemoglobin glbn | protein | 117 | 68% helix, 0% strand | P9WN25 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · chains A
- GOL · Glycerol · additive · 2 copies · chains A
- FMT · Formic acid · additive · chains A
- ACT · Acetate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 360 | 0.73 | 0.84 | 37 | HEM, FMT, GOL |
Compared structures
- 5AB8 · High resolution X-ray structure of the N-terminal truncated form (residues 1-11) of… · the same entry in another collection · chain A against A, TM-score 1.00
- P9WN25 · AlphaFold monomer V2.0 prediction for group 1 truncated hemoglobin glbn (P9WN25) · a predicted model of the same protein · chain A against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P9WN25
- Elsewhere: RCSB PDB 5AB8 · PDBe 5AB8 · UniProt P9WN25
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